Welcome to teemi’s documentation!¶
Our mission is to revolutionize the way in which we make biology. How do we do that? We pursue reproducible high-throughput strain construction by adopting literate programming with teemi. We hope you want to be part of the revolution. Below you will find documentation for how to install and use teemi.
Suppose you are interested in examples, head over to our notebooks. Feel free to reach out if something is unclear.
Getting started¶
To get started with making microbial strains in an HT manner please follow the steps below:
Install teemi. You will find the necessary information below under installation.
Check out our notebooks for inspiration to make high-throughput strain construction with teemi.
You can start making your own workflows by importing teemi into either Google colab or Jupyter lab/notebooks.
Contents:
- teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering
- Overview
- Features
- A Quick Guide to Creating a Combinatorial Library
- A Quick Guide to making a CRISPR plasmid with USER cloning (for the beginner)
- Colab notebooks
- Credits
- Installation
- Usage
- Contributing
- Credits
- History
- teemis modules
- Colab notebooks for enhancing biological workflows
- Design module
- Build module
- Test module
- Learn module
- LIMS module
- API