teemi.design.retrieve_gene_homologs

This part of the design module is used fetching gene homologs

Functions

alignment_identity(query, reference)	Calculates percent identity between a reference and query(s).
all_orfs(seq)	Return all ORFs of a sequence.
codon_optimize_with_dnachisel(sequences[, …])	Codon-optimize sequences with_dnachisel.
filter_blast_results(blast_record[, …])
find_all_starts(seq)	Find the starting index of all start codons in a lowercase seq This function was made by Justin Bois : http://justinbois.github.io/.
find_first_in_register_stop(seq)	Find first stop codon on lowercase seq that starts at an index that is divisible by three.
longest_orf(seq[, n])	Longest ORF of a sequence.